Tracker
System was developed and maintained by KU bioinformatics
facility. This is a system for monitoring the following: protein searches
using HMMER and Blast-P, nucleotide searches using Blast-N, and literature
searches of the PubMed databases. Your searches will be run against
new information to keep you up to date. If there are results on your
searches, you will be notified by email and will then be able to access
results and link to more information on the NCBI site. You will be able
to monitor, edit, or delete your searches on this website using the
buttons on the lefthand menu. Tracker is available for download. Click
here for more detail. A paper on the system was published in Bioinformatics
Journal recently (Bioinformatics 2005 21(3):388-389). You can download
the article here
if your institution subscribes the journal.
- BLAST server: our local BLAST server.
- EMBOSS package web-based interface to popular EMBOSS package.
- DS Gene (for Windows) and MacVector (for Mac): both are biological sequence manipulation software packages. KU Lawrence holds seven network concurrent DS Gene licenses and five MacVector licenses. KUMC holds three DS Gene licenses. All licenses are shared by K-BRIN researchers. Please contact Dr. Jianwen Fang if you need to access the software.
- GeneSpring: popular microarray data analysis software. It supports Windows/Mac/LINUX. KBRIN has eight network concurrent licenses. Please contact Dr. Stan Svojanovsky or Dr. Jianwen Fang if you need to access the software. Available to all K-BRIN researchers.
- MOE (molecular operating environment): a software suite for protein homology modeling, hight throughput screening, molecular modeling and simulation, structure-based design, etc. Two concurrent licenses are shared by K_BRIN researchers. Please contact Dr. Jianwen Fang if you need to access the software.
- AMBER: is a package of molecular simulations programs. It is installed in our LINUX cluster. Please contact Dr. Jianwen Fang if you want to set up a user account in the cluster in order to access the software.