- ENTREZ - a retrieval system for searching several linked databases
- SWISS-PROT & TrEMBL
- PDB - protein 3D structure database
- DDJB -DNA Databank of Japan
- PIR - the Protein Sequence Database
- InterPro - a useful resource for whole genome analysis and proteome analysis
- Prosite - a database of protein families and domains
- ExPASy - dedicated to the analysis of protein sequences and structures as well as 2-D PAGE
- Ensembl - produces and maintains automatic annotation on eukaryotic genomes
- GDB (Genome Database) - an encyclopedia of the human genome
- Mammalian Gene Collection - provide a complete set of full-length (open reading frame) sequences and cDNA clones of expressed genes for human and mouse.
- GeneCards - a database of human genes, their products and their involvement in diseases
- TIGR CMR (Comprehensive Microbial Resource) - access all of the bacterial genome sequences completed to date
- SGD (Saccharomyces Genome Database) - a scientific database of the molecular biology and genetics of baker's or budding yeast.
- WormBase - C. Elegans
- BDGP - Berkeley Drosophila Genome Project
- MGI - Mouse Genome Informatics
- TAIR - the Arabidopsis Information Resource
- ZFIN - the zebrafish Information Network
- CGSC - E. Coli Genetic Stock Senter
- HIV databases - contain data on HIV genetic sequences, immunological epitopes, drug resistance-associated mutations, and vaccine trials.
- PatternFind Server - Search a protein sequence database with a pattern
- BLAST @ NCBI
- FASTA @ EMBL-EBI
- Bioccelerator @ EMBL - Fast and Sensitive Smith-Waterman, Profile and Frame-shifting Database Searches.
- CPAN - Comprehensive Perl Archive Network
- Bioperl - Open source Perl tools for bioinformatics, genomics and life science research.
- Biojava - Open-source project dedicated to providing Java tools for processing biological data
- Genamics SoftwareSeek - Arespository and database of freely-distributable and commercial tools for use in molecular biology and biochemistry.
- Bioinformatics.org- An international organization which promotes freedom and openness in the field of bioinformatics.
- Bioinformatics.ca- Bioinformatics.ca is the portal to bioinformatics activities in Canada and the home for the CGDN- sponsored Canadian Bioinformatics Workshops series hosted nation-wide.
- MolBio.net -Jump to Online Bioinformatics and Molecular Biology Links
- http://pbil.univ-lyon1.fr/
- The
PSIPRED Protein Structure Prediction Server
- USC Sequence Alignment Server - align 2 sequences with all possible varieties of dynamic programming
- T-COFFEE - multiple sequence alignment
- ClustalW @ EBI - multiple sequence alignment
- BOXSHADE - pretty printing and shading of multiple alignments
- Spidey @ NCBI- an mRNA-to-genomic alignment program
- VISTA - align + detect conserved regions in long genomic sequences
- Wise2 - align a protein or profile HMM against genomic sequence to predict a gene structure, and related tools
- Godzilla/GeneomeVista- The Berkeley Genome Pipeline- align a sequence to its ortholog in the human genome
- A Guide to Molecular Sequence Analysis - Andrew Louka
- BioPerl 1.0 Tutorial
Databases
Sequence Searching
Computational Resources
Sequence Alignment
Bioinformatics tutorials