******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 3.0 (Release date: 2002/04/02 00:11:59) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.sdsc.edu. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.sdsc.edu. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /home/fang/ppi/new_PPI_032305/memeinput_032405/MEME_YDR086C.fasta ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ YML010W 1.0000 1063 YDR418W 1.0000 165 YNL185C 1.0000 158 YPL220W 1.0000 217 YEL054C 1.0000 165 YDR116C 1.0000 285 YGL135W 1.0000 217 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /home/fang/ppi/new_PPI_032305/memeinput_032405/MEME_YDR086C.fasta -protein -nmotifs 5 -minw 10 -maxw 300 -minsites 3 -mod zoops -maxsize 1000000 -evt 0.1 model: mod= zoops nmotifs= 5 evt= 0.1 object function= E-value of product of p-values width: minw= 10 maxw= 300 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 3 maxsites= 7 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 em: prior= megap b= 11350 maxiter= 50 distance= 1e-05 data: n= 2270 N= 7 sample: seed= 0 seqfrac= 1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.076 C 0.007 D 0.066 E 0.060 F 0.029 G 0.083 H 0.013 I 0.058 K 0.092 L 0.072 M 0.019 N 0.049 P 0.049 Q 0.040 R 0.051 S 0.081 T 0.054 V 0.073 W 0.007 Y 0.021 Background letter frequencies (from dataset with add-one prior applied): A 0.076 C 0.008 D 0.066 E 0.060 F 0.029 G 0.083 H 0.013 I 0.058 K 0.092 L 0.072 M 0.019 N 0.049 P 0.049 Q 0.040 R 0.051 S 0.081 T 0.054 V 0.073 W 0.008 Y 0.021 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 49 sites = 4 llr = 451 E-value = 2.4e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 5::::::5::::::::::::::::::::::::::::5:::::::::::: pos.-specific C ::::::::::::::::::::::::::::::::::::::::::::::::: probability D ::::::::::::::5:::5:::::::::::5::::::5:::a::::::: matrix E ::::::5:::a::::::5:::::::5::5::5::5:::::::::::::: F :::::::::::::::::::::::5::::::::::::::::::::a:::: G :::::::::::::::::::::::::5::::::5::::::::::::55:: H :::::::5:::::::::::::::5::::::::::::::::::::::::: I :::::5:::::::::::::::::::::5::::55:5::::::::::::: K :::::::::a:::5::55:a5:5:::::::::::5:::::::a:::::: L :::5::::5::55:::::::::::5::::a:::5::::::::::::::a M :::::::::::::::::::::::::::::::::::::::5::::::::: N ::::::::::::::::5:::5:5:::5::::::::5::::::::::::: P :::::::::::55:::::::::::::::::::::::::5:::::::::: Q :::5::::::::::::::::::::::::5:5:::::::55::::::::: R :::::5:::::::5:5:::::5:::::::::::::::5::a::5::5:: S :aa::::::::::::5::::::::5::::::::::::::::::5:5:5: T 5:::::5:::::::::::5:::::::5::::::::::::::::::::5: V ::::a:::5::::::::::::5:::::5:::5::::::::::::::::: W ::::::::::::::::::::::::::::::::::::::::::::::::: Y ::::::::::::::5:::::::::::::::::::::5:::::::::::: bits 7.0 6.3 5.6 4.9 * * Information 4.2 * * * *** * content 3.5 ***** * ** * * * * *** ** ***** * * (162.6 bits) 2.8 ************************************************* 2.1 ************************************************* 1.4 ************************************************* 0.7 ************************************************* 0.0 ------------------------------------------------- Multilevel ASSLVIEALKELLKDRKEDKKRKFLENIELDEGIEIADPMRDKRFGGSL consensus T Q RTHV PPRYSNKT NVNHSGTVQ QVILKNYRQQ S SRT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------------------------------- YGL135W 5 2.70e-50 MSKI TSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSL KLPNCPRPNM YPL220W 5 2.70e-50 MSKI TSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSL KLPNCPRPNM YEL054C 77 2.07e-48 RQAAASVVPS ASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTL ASVTKEILGT YDR418W 77 2.07e-48 RQAAASVVPS ASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTL ASVTKEILGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YGL135W 2.7e-50 4_[1]_164 YPL220W 2.7e-50 4_[1]_164 YEL054C 2.1e-48 76_[1]_40 YDR418W 2.1e-48 76_[1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=49 seqs=4 YGL135W ( 5) TSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSL 1 YPL220W ( 5) TSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSL 1 YEL054C ( 77) ASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTL 1 YDR418W ( 77) ASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 49 n= 1934 bayes= 8.42776 E= 2.4e-029 243 24 -312 -251 -242 -182 -169 -228 -314 -240 -156 -213 -261 -222 -254 -52 278 -163 -239 -244 -137 -48 -318 -331 -283 -287 -199 -352 -346 -332 -244 -176 -303 -291 -277 327 63 -341 -267 -249 -137 -48 -318 -331 -283 -287 -199 -352 -346 -332 -244 -176 -303 -291 -277 327 63 -341 -267 -249 -197 -108 -292 -137 -100 -351 -18 -102 -197 229 2 -224 -295 327 -143 -247 -188 -152 -157 -143 -117 -35 -391 -329 -202 -395 -209 22 -403 -135 -120 -360 -335 -337 -308 -324 -151 341 -281 -285 -177 -76 -316 -201 -146 -320 -65 235 -91 -82 -56 -212 -297 -114 297 -229 -156 -67 -162 -137 -120 -147 -50 264 -267 -246 -52 -256 -139 -238 -156 -102 -231 -39 -140 -114 252 -225 -252 -198 225 -27 -200 -144 -168 -203 472 -242 -197 -213 -144 -122 -245 -104 -146 -114 -126 -194 -175 -71 -201 -57 -467 -375 -74 -426 -233 58 -422 254 26 -375 -377 -314 -340 -340 -189 233 -189 -182 -343 -225 -471 -386 -456 -467 -248 -387 330 -417 -330 -337 -427 -329 -33 -424 -348 -455 -313 -374 -473 -422 -233 400 -538 -534 -350 -522 -572 -565 -495 -417 -598 -344 -524 -533 -499 -551 -478 -499 -155 -114 -323 -252 -140 -329 -157 -139 -300 211 -60 -289 331 -216 -248 -225 -193 -172 -214 -196 -155 -114 -323 -252 -140 -329 -157 -139 -300 211 -60 -289 331 -216 -248 -225 -193 -172 -214 -196 -264 -187 -366 -223 -379 -365 -69 -335 256 -292 -223 -221 -344 -98 266 -288 -237 -347 -235 -254 -221 -147 271 -103 21 -268 7 -293 -258 -246 -202 -78 -308 -175 -228 -197 -210 -290 -60 392 -122 -86 -202 -132 -257 -239 -30 -279 -67 -238 -166 -116 -251 -75 292 193 -66 -257 -203 -175 -177 -160 -111 -92 -281 -218 6 -302 199 -255 -184 277 -262 -54 -10 -138 -138 -288 -221 -172 -140 -216 -52 265 -308 -265 -32 -297 183 -245 -169 -123 -239 -10 -40 -172 -148 -262 -253 -202 -158 -124 254 -37 -274 -215 -47 -288 -203 -286 -199 -27 -264 -118 -192 -90 260 -263 -258 -203 -343 -225 -471 -386 -456 -467 -248 -387 330 -417 -330 -337 -427 -329 -33 -424 -348 -455 -313 -374 -177 -160 -111 -92 -281 -218 6 -302 199 -255 -184 277 -262 -54 -10 -138 -138 -288 -221 -172 -131 -54 -293 -178 -160 -296 -60 -60 -88 -116 -75 -200 -279 -106 271 -205 -132 228 -172 -144 -177 -160 -111 -92 -281 -218 6 -302 199 -255 -184 277 -262 -54 -10 -138 -138 -288 -221 -172 -307 -132 -354 -331 368 -397 490 -256 -377 -177 -157 -213 -365 -184 -251 -297 -277 -274 42 212 -93 -23 -282 -211 -93 -256 -108 -81 -249 241 -13 -196 -260 -179 -199 197 -62 -102 -152 -115 -151 -186 -85 238 -333 249 -96 -356 -206 -324 -244 -113 -278 -107 -203 -180 -195 -314 -285 -249 -161 -86 -126 -164 -255 -227 -39 -253 -219 -277 -174 280 -277 -148 -193 -46 286 -237 -236 -202 -217 -84 -435 -384 -175 -451 -288 313 -429 -31 -36 -371 -410 -368 -377 -359 -201 221 -275 -238 -159 -242 -49 257 -345 -305 -13 -329 -160 -261 -170 -164 -253 333 -157 -210 -189 -292 -277 -258 -300 -138 -483 -381 -75 -462 -233 -69 -426 352 44 -405 -372 -289 -321 -384 -275 -142 -189 -198 -161 -203 252 73 -304 -231 -23 -332 -158 -282 -205 -48 -251 287 -156 -155 -160 -298 -271 -208 -121 -104 -84 261 -204 -289 -94 -78 -179 -151 -107 -183 -255 -72 -178 -198 -141 219 -238 -190 -128 -57 -307 -274 -168 248 -170 239 -321 -117 -87 -235 -318 -259 -264 -207 -173 -64 -204 -182 -261 -106 -472 -400 -74 -461 -264 293 -437 234 39 -388 -407 -329 -365 -370 -230 18 -194 -191 -140 -216 -52 265 -308 -265 -32 -297 183 -245 -169 -123 -239 -10 -40 -172 -148 -262 -253 -202 -174 -68 -214 -209 -138 -289 -59 240 -245 -89 -63 302 -305 -184 -210 -188 -139 -34 -178 -133 214 -17 -284 -219 87 -243 24 -173 -273 -149 -102 -212 -274 -198 -213 -148 -152 -157 -17 413 -181 -172 255 -28 -289 -239 -28 -322 -108 -276 -207 -57 -267 -80 267 -164 -164 -302 -237 -192 -134 -143 -222 -118 -265 -290 -61 -296 -205 -239 -189 -199 336 272 -166 -183 -176 -271 -255 -237 -171 -109 -250 -86 -159 -321 31 -162 -155 -94 344 -185 -274 361 -104 -213 -168 -186 -163 -151 -336 -144 -446 -409 -391 -416 -96 -390 -175 -350 -316 -314 -347 -211 413 -367 -343 -462 -204 -319 -315 -231 373 -84 -352 -377 -156 -397 -425 -391 -329 -85 -435 -315 -361 -324 -343 -390 -301 -290 -343 -225 -471 -386 -456 -467 -248 -387 330 -417 -330 -337 -427 -329 -33 -424 -348 -455 -313 -374 -122 -86 -202 -132 -257 -239 -30 -279 -67 -238 -166 -116 -251 -75 292 193 -66 -257 -203 -175 -328 -103 -456 -419 490 -467 -247 -223 -492 -115 -146 -413 -390 -419 -429 -342 -374 -269 -82 31 -66 -48 -225 -251 -318 268 -155 -369 -322 -351 -262 -150 -287 -249 -269 182 -132 -288 -274 -273 -172 -146 -243 -211 -323 262 -100 -353 -147 -318 -244 -169 -315 -161 257 -208 -222 -327 -241 -243 -138 -30 -307 -309 -259 -305 -173 -273 -311 -294 -175 -144 -292 -245 -246 262 266 -264 -243 -241 -300 -138 -483 -381 -75 -462 -233 -69 -426 352 44 -405 -372 -289 -321 -384 -275 -142 -189 -198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 49 n= 1934 E= 2.4e-029 0.406815 0.009310 0.007525 0.010479 0.005388 0.023405 0.004048 0.011838 0.010402 0.013614 0.006365 0.011296 0.008108 0.008609 0.008756 0.056555 0.368585 0.023538 0.001495 0.003870 0.029314 0.005647 0.007232 0.006045 0.004050 0.011297 0.003306 0.005029 0.008320 0.007234 0.003465 0.014555 0.006024 0.005351 0.007515 0.780880 0.082902 0.006869 0.001234 0.003731 0.029314 0.005647 0.007232 0.006045 0.004050 0.011297 0.003306 0.005029 0.008320 0.007234 0.003465 0.014555 0.006024 0.005351 0.007515 0.780880 0.082902 0.006869 0.001234 0.003731 0.019315 0.003726 0.008650 0.023111 0.014428 0.007244 0.011577 0.028386 0.023393 0.351824 0.019054 0.010443 0.006401 0.388388 0.018914 0.014634 0.014572 0.025507 0.002656 0.007779 0.033540 0.006154 0.004365 0.006108 0.007124 0.005323 0.003086 0.067156 0.005611 0.028205 0.008194 0.004075 0.004845 0.003893 0.006028 0.008605 0.018803 0.774863 0.001124 0.002900 0.022152 0.004647 0.007306 0.014837 0.010511 0.008984 0.008345 0.293845 0.048651 0.040745 0.012761 0.011343 0.006295 0.018285 0.400064 0.016557 0.018190 0.045782 0.002566 0.008134 0.032837 0.002829 0.046413 0.372788 0.004524 0.014999 0.009122 0.009788 0.034989 0.013837 0.006377 0.024250 0.009925 0.030577 0.019384 0.036896 0.308479 0.015287 0.001371 0.005328 0.359985 0.006508 0.016377 0.022056 0.009005 0.020269 0.346319 0.010762 0.023445 0.016499 0.006899 0.021244 0.009045 0.019517 0.018586 0.036793 0.022504 0.019031 0.002344 0.012811 0.018764 0.005312 0.002580 0.004440 0.017305 0.004297 0.002610 0.085964 0.004922 0.418245 0.022449 0.003669 0.003625 0.004568 0.004831 0.007668 0.014452 0.366247 0.002114 0.005936 0.006992 0.001656 0.002500 0.004114 0.001219 0.003250 0.002354 0.003953 0.901146 0.004000 0.001911 0.004781 0.002555 0.004119 0.040756 0.004295 0.004818 0.003117 0.000897 0.001566 0.002855 0.000423 0.013069 0.959594 0.000690 0.002045 0.001155 0.001548 0.001735 0.001436 0.000609 0.002751 0.000781 0.003700 0.001355 0.002020 0.001689 0.001600 0.000286 0.000660 0.025732 0.003565 0.006986 0.010462 0.010910 0.008424 0.004422 0.021999 0.011426 0.310673 0.012363 0.006661 0.487774 0.008985 0.009137 0.017101 0.014094 0.022109 0.001785 0.005392 0.025732 0.003565 0.006986 0.010462 0.010910 0.008424 0.004422 0.021999 0.011426 0.310673 0.012363 0.006661 0.487774 0.008985 0.009137 0.017101 0.014094 0.022109 0.001785 0.005392 0.012114 0.002153 0.005177 0.012769 0.002088 0.006552 0.008117 0.005659 0.539668 0.009544 0.004002 0.010654 0.004555 0.020429 0.323349 0.011063 0.010391 0.006567 0.001543 0.003605 0.016304 0.002841 0.428607 0.029215 0.033387 0.012890 0.013760 0.007579 0.015340 0.013132 0.004615 0.028646 0.005852 0.011956 0.010511 0.020702 0.012553 0.009756 0.005168 0.317185 0.032494 0.004336 0.016166 0.023894 0.004859 0.015740 0.010654 0.008322 0.057752 0.013858 0.005947 0.022013 0.008685 0.023932 0.387298 0.309566 0.034019 0.012313 0.001931 0.006220 0.022157 0.002600 0.030344 0.031588 0.004120 0.018183 0.013701 0.007097 0.363768 0.012270 0.005253 0.335683 0.008039 0.027725 0.047684 0.031206 0.020640 0.009885 0.001700 0.006358 0.028692 0.001755 0.045644 0.376389 0.003402 0.013108 0.010464 0.007353 0.325110 0.013199 0.005828 0.021063 0.009430 0.037359 0.038799 0.024711 0.019279 0.011864 0.001364 0.005186 0.025201 0.003327 0.379961 0.046426 0.004299 0.018638 0.009472 0.007842 0.022438 0.009950 0.004717 0.040863 0.007912 0.017706 0.013502 0.043478 0.326036 0.011784 0.001311 0.005137 0.006992 0.001656 0.002500 0.004114 0.001219 0.003250 0.002354 0.003953 0.901146 0.004000 0.001911 0.004781 0.002555 0.004119 0.040756 0.004295 0.004818 0.003117 0.000897 0.001566 0.022157 0.002600 0.030344 0.031588 0.004120 0.018183 0.013701 0.007097 0.363768 0.012270 0.005253 0.335683 0.008039 0.027725 0.047684 0.031206 0.020640 0.009885 0.001700 0.006358 0.030472 0.005404 0.008608 0.017463 0.009521 0.010592 0.008653 0.038030 0.049782 0.032312 0.011190 0.012303 0.007148 0.019318 0.334305 0.019551 0.021554 0.353692 0.002393 0.007709 0.022157 0.002600 0.030344 0.031588 0.004120 0.018183 0.013701 0.007097 0.363768 0.012270 0.005253 0.335683 0.008039 0.027725 0.047684 0.031206 0.020640 0.009885 0.001700 0.006358 0.008969 0.003157 0.005614 0.006023 0.370438 0.005268 0.390446 0.009761 0.006721 0.021084 0.006303 0.011280 0.003920 0.011260 0.008973 0.010347 0.007850 0.010889 0.010487 0.091209 0.039535 0.006699 0.009247 0.013848 0.015112 0.014016 0.006182 0.032958 0.016278 0.383485 0.017119 0.012644 0.008143 0.011653 0.012867 0.317147 0.035045 0.035842 0.002750 0.009428 0.026480 0.002170 0.036416 0.311820 0.002872 0.463782 0.006735 0.004877 0.021968 0.007636 0.003472 0.022594 0.007184 0.019140 0.012498 0.023377 0.013857 0.008291 0.001090 0.003741 0.024723 0.004340 0.027317 0.019130 0.004930 0.017115 0.009988 0.009994 0.020158 0.010541 0.005625 0.342612 0.007226 0.014359 0.013385 0.058965 0.388846 0.014063 0.001534 0.005150 0.016743 0.004401 0.003218 0.004166 0.008548 0.003620 0.001778 0.504641 0.004702 0.058158 0.014584 0.003764 0.002869 0.003140 0.003748 0.006759 0.013375 0.336591 0.001165 0.004027 0.025033 0.001468 0.046494 0.356159 0.002631 0.009970 0.011985 0.005914 0.030333 0.011770 0.005786 0.015860 0.008550 0.403076 0.017240 0.018890 0.014523 0.009658 0.001154 0.003505 0.009439 0.003021 0.002306 0.004272 0.017184 0.003345 0.002598 0.035794 0.004794 0.825779 0.025451 0.002972 0.003736 0.005422 0.005539 0.005653 0.007980 0.027299 0.002118 0.005298 0.024764 0.001927 0.375410 0.099289 0.003505 0.016683 0.011206 0.005772 0.030779 0.010182 0.004534 0.035271 0.008676 0.293901 0.017289 0.027669 0.017735 0.009248 0.001199 0.004961 0.032767 0.003835 0.036652 0.364952 0.007002 0.011116 0.006809 0.033642 0.026510 0.025215 0.008932 0.013906 0.008433 0.024395 0.014881 0.020549 0.020156 0.333117 0.001511 0.005620 0.031053 0.005278 0.007811 0.008948 0.008969 0.459496 0.004043 0.301958 0.009910 0.032021 0.010244 0.009646 0.005457 0.006680 0.008217 0.019409 0.016198 0.046799 0.001905 0.005957 0.012357 0.003758 0.002494 0.003751 0.017227 0.003373 0.002099 0.438539 0.004437 0.365223 0.024647 0.003350 0.002937 0.004101 0.004077 0.006237 0.010881 0.082899 0.002043 0.005569 0.028692 0.001755 0.045644 0.376389 0.003402 0.013108 0.010464 0.007353 0.325110 0.013199 0.005828 0.021063 0.009430 0.037359 0.038799 0.024711 0.019279 0.011864 0.001364 0.005186 0.022652 0.004896 0.014822 0.014008 0.011067 0.011118 0.008728 0.304768 0.016775 0.039005 0.012165 0.399921 0.005955 0.011228 0.011890 0.022066 0.020560 0.057733 0.002282 0.008363 0.333115 0.006994 0.009157 0.013151 0.052599 0.015286 0.015476 0.017369 0.013832 0.025729 0.009275 0.011317 0.007411 0.010211 0.011645 0.029153 0.018674 0.024611 0.006966 0.368027 0.021499 0.002383 0.382944 0.049177 0.003898 0.015773 0.010808 0.006168 0.043368 0.010647 0.004483 0.033270 0.007759 0.023061 0.325452 0.026030 0.017200 0.009020 0.001518 0.005541 0.029865 0.002925 0.014036 0.026464 0.004595 0.011063 0.008602 0.007411 0.022215 0.013722 0.005062 0.012417 0.506002 0.264181 0.016190 0.022844 0.015873 0.011126 0.001343 0.004063 0.023067 0.003691 0.011557 0.032902 0.009571 0.008913 0.016236 0.018698 0.031373 0.037600 0.203312 0.013713 0.007407 0.491847 0.024826 0.018612 0.016776 0.020027 0.002535 0.007337 0.007339 0.002900 0.002969 0.003514 0.001914 0.004618 0.006744 0.003854 0.027187 0.006380 0.002105 0.005612 0.004457 0.009291 0.892622 0.006360 0.004974 0.002958 0.001906 0.002295 0.008517 0.001588 0.867471 0.033510 0.002519 0.006046 0.004429 0.003675 0.004803 0.004803 0.001919 0.027379 0.002418 0.004515 0.004173 0.008596 0.004974 0.004878 0.000977 0.002810 0.006992 0.001656 0.002500 0.004114 0.001219 0.003250 0.002354 0.003953 0.901146 0.004000 0.001911 0.004781 0.002555 0.004119 0.040756 0.004295 0.004818 0.003117 0.000897 0.001566 0.032494 0.004336 0.016166 0.023894 0.004859 0.015740 0.010654 0.008322 0.057752 0.013858 0.005947 0.022013 0.008685 0.023932 0.387298 0.309566 0.034019 0.012313 0.001931 0.006220 0.007754 0.003847 0.002781 0.003278 0.857933 0.003246 0.002372 0.012252 0.003025 0.032360 0.006823 0.002812 0.003315 0.002195 0.002615 0.007586 0.004021 0.011320 0.004438 0.026026 0.047672 0.005642 0.013805 0.010486 0.003183 0.529378 0.004463 0.004464 0.009839 0.006321 0.003057 0.017457 0.006729 0.007148 0.007900 0.286709 0.021499 0.009913 0.001174 0.003162 0.022927 0.002860 0.012142 0.013827 0.003071 0.507564 0.006535 0.004977 0.033122 0.007933 0.003470 0.015248 0.005571 0.013166 0.303965 0.019169 0.011522 0.007571 0.001474 0.003885 0.028977 0.006382 0.007815 0.007005 0.004796 0.009947 0.003941 0.008695 0.010601 0.009358 0.005579 0.018150 0.006502 0.007355 0.009299 0.499735 0.338789 0.011671 0.001455 0.003947 0.009439 0.003021 0.002306 0.004272 0.017184 0.003345 0.002598 0.035794 0.004794 0.825779 0.025451 0.002972 0.003736 0.005422 0.005539 0.005653 0.007980 0.027299 0.002118 0.005298 -------------------------------------------------------------------------------- Time 4.66 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 35 sites = 4 llr = 321 E-value = 8.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :::::5:::::::::::::::::5:55:::::::: pos.-specific C ::::::::::5::::::::::5::::::::::::: probability D 5::::::5:::::5:::::5::::::::::::::5 matrix E 5:::::::::::::::::::::5:::::5:a:5a: F ::::::::::::::a:::::::::::::::::::: G :::a:::::5:::::::::::::5:::a::::::: H ::::::::::::::::::5:::::::::::::::: I :5::::::::::5:::::::55::5::::5:5::: K ::::5::::::::5:5:55:::::::::::::::: L :55:::::::::::::5:::5:5:::::::::::: M :::::::::::::::::::::::::::::::5::: N ::::::::::::::::5::::::::5::5:::::5 P :::::::::::::::::5::::::::::::::5:: Q ::::::5::::::::5::::::::::::::::::: R :::::::::5:5::::::::::::::::::::::: S :::::::5::5:::::::::::::::::::::::: T ::::5:5::::5::::::::::::::::::::::: V :::::5::a:::5::::::5::::5:5::5::::: W ::::::::::::::::::::::::::::::::::: Y ::5:::::::::::::::::::::::::::::::: bits 7.0 6.3 5.6 4.9 * * Information 4.2 * * * * ** * content 3.5 ** * * ** * * * ** **** (115.7 bits) 2.8 *********************************** 2.1 *********************************** 1.4 *********************************** 0.7 *********************************** 0.0 ----------------------------------- Multilevel DILGKAQDVGCRIDFKLKHDICEAIAAGEIEIEED consensus ELY TVTS RSTVK QNPKVLILGVNV NV MP N sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------------- YEL054C 131 1.09e-36 FGRTLASVTK EILGTAQSVGCRVDFKNPHDIIEGINAGEIEIPEN YDR418W 131 1.09e-36 FGRTLASVTK EILGTAQSVGCRVDFKNPHDIIEGINAGEIEIPEN YGL135W 143 5.09e-34 KFPTPVSHND DLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEED VLVNQILMSV YPL220W 143 5.09e-34 KFPTPVSHND DLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEED VLVNQILMSV -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YEL054C 1.1e-36 130_[2] YDR418W 1.1e-36 130_[2] YGL135W 5.1e-34 142_[2]_40 YPL220W 5.1e-34 142_[2]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=35 seqs=4 YEL054C ( 131) EILGTAQSVGCRVDFKNPHDIIEGINAGEIEIPEN 1 YDR418W ( 131) EILGTAQSVGCRVDFKNPHDIIEGINAGEIEIPEN 1 YGL135W ( 143) DLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEED 1 YPL220W ( 143) DLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEED 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 35 n= 2032 bayes= 8.49928 E= 8.0e-018 -205 -298 280 269 -391 -320 -129 -380 -236 -347 -275 -126 -308 -92 -268 -251 -243 -339 -351 -300 -261 -106 -472 -400 -74 -461 -264 293 -437 234 39 -388 -407 -329 -365 -370 -230 18 -194 -191 -249 -95 -408 -338 100 -402 -10 -98 -372 245 -12 -304 -357 -263 -285 -304 -239 -151 14 415 -195 -192 -283 -318 -376 343 -219 -434 -372 -435 -327 -230 -376 -345 -299 -256 -325 -397 -275 -317 -148 -108 -197 -104 -249 -265 -23 -234 194 -215 -131 -110 -257 -52 -1 -100 262 -218 -200 -172 227 22 -365 -287 -180 -239 -189 -27 -358 -134 -95 -299 -308 -276 -282 -148 -126 248 -225 -226 -123 -77 -175 -75 -224 -254 -10 -220 -130 -205 -114 -108 -245 299 -95 -77 270 -201 -198 -173 -157 -138 270 -44 -295 -185 -30 -357 -207 -321 -252 5 -261 -123 -201 188 -105 -323 -277 -201 -117 -35 -391 -329 -202 -395 -209 22 -403 -135 -120 -360 -335 -337 -308 -324 -151 341 -281 -285 -172 -146 -243 -211 -323 262 -100 -353 -147 -318 -244 -169 -315 -161 257 -208 -222 -327 -241 -243 -26 559 -341 -327 -271 -191 -202 -294 -375 -290 -213 -228 -272 -275 -299 230 -50 -227 -270 -258 -150 -90 -238 -150 -246 -276 -39 -233 -62 -220 -138 -137 -268 -77 281 -99 266 -219 -197 -182 -217 -84 -435 -384 -175 -451 -288 313 -429 -31 -36 -371 -410 -368 -377 -359 -201 221 -275 -238 -160 -182 247 26 -288 -219 -18 -316 176 -268 -194 -37 -249 -54 -76 -142 -144 -288 -248 -186 -328 -103 -456 -419 490 -467 -247 -223 -492 -115 -146 -413 -390 -419 -429 -342 -374 -269 -82 31 -175 -166 -208 -68 -293 -281 13 -281 202 -217 -142 -127 -268 302 54 -184 -149 -264 -198 -174 -174 -86 -196 -178 -99 -275 -48 -98 -211 233 -30 284 -286 -153 -175 -183 -150 -131 -153 -102 -142 -152 -234 -145 -274 -289 -79 -294 156 -243 -197 -187 333 -113 -78 -184 -171 -271 -253 -228 -186 -161 -205 -109 -243 -273 452 -286 208 -226 -156 -107 -274 -25 40 -182 -154 -270 -185 -116 -151 -94 269 -42 -210 -286 -105 -81 -251 -173 -134 -123 -294 -160 -229 -209 -163 206 -239 -195 -261 -106 -472 -400 -74 -461 -264 293 -437 234 39 -388 -407 -329 -365 -370 -230 18 -194 -191 -178 562 -461 -384 -132 -384 -246 264 -425 -52 -41 -360 -382 -338 -356 -299 -176 29 -227 -191 -150 -134 -97 253 -143 -297 -83 -126 -168 231 -44 -178 -256 -69 -159 -203 -158 -150 -198 -156 222 -9 -304 -290 -301 257 -203 -334 -363 -319 -232 -232 -298 -283 -291 -114 -161 -230 -264 -289 -217 -84 -435 -384 -175 -451 -288 313 -429 -31 -36 -371 -410 -368 -377 -359 -201 221 -275 -238 227 -30 -127 -130 -247 -167 -48 -274 -208 -258 -185 286 -244 -138 -183 -87 -111 -217 -237 -193 227 22 -365 -287 -180 -239 -189 -27 -358 -134 -95 -299 -308 -276 -282 -148 -126 248 -225 -226 -195 -192 -283 -318 -376 343 -219 -434 -372 -435 -327 -230 -376 -345 -299 -256 -325 -397 -275 -317 -157 -199 -17 270 -303 -200 -19 -337 -152 -294 -222 268 -244 -56 -158 -129 -143 -303 -282 -199 -217 -84 -435 -384 -175 -451 -288 313 -429 -31 -36 -371 -410 -368 -377 -359 -201 221 -275 -238 -473 -422 -233 400 -538 -534 -350 -522 -572 -565 -495 -417 -598 -344 -524 -533 -499 -551 -478 -499 -232 -79 -473 -393 -71 -438 -249 283 -428 36 409 -379 -401 -328 -361 -350 -207 15 -182 -175 -131 -191 -92 234 -299 -283 -103 -311 -195 -263 -214 -180 322 -83 -196 -185 -176 -274 -300 -257 -473 -422 -233 400 -538 -534 -350 -522 -572 -565 -495 -417 -598 -344 -524 -533 -499 -551 -478 -499 -247 -198 313 -78 -328 -226 -47 -393 -274 -374 -312 233 -324 -186 -264 -168 -207 -382 -293 -233 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 35 n= 2032 E= 8.0e-018 0.018229 0.000995 0.457443 0.385588 0.001920 0.008967 0.005354 0.004152 0.017845 0.006504 0.002796 0.020559 0.005854 0.021303 0.007964 0.014294 0.009947 0.006972 0.000690 0.002622 0.012357 0.003758 0.002494 0.003751 0.017227 0.003373 0.002099 0.438539 0.004437 0.365223 0.024647 0.003350 0.002937 0.004101 0.004077 0.006237 0.010881 0.082899 0.002043 0.005569 0.013402 0.004067 0.003873 0.005748 0.057762 0.005101 0.012239 0.029296 0.006947 0.393809 0.017290 0.005988 0.004158 0.006478 0.007098 0.009890 0.010219 0.025643 0.008666 0.372325 0.019534 0.002082 0.009182 0.006599 0.002126 0.890941 0.002879 0.002844 0.006953 0.003535 0.001949 0.010016 0.003654 0.003671 0.006448 0.013794 0.005650 0.004639 0.001172 0.002331 0.027062 0.003723 0.016773 0.029133 0.005141 0.013173 0.011134 0.011371 0.353085 0.016197 0.007549 0.022985 0.008303 0.027944 0.050863 0.040669 0.330500 0.016062 0.001960 0.006372 0.365607 0.009147 0.005215 0.008170 0.008278 0.015695 0.003542 0.047668 0.007642 0.028420 0.009690 0.006212 0.005851 0.005913 0.007219 0.029071 0.022388 0.408243 0.001650 0.004379 0.032151 0.004597 0.019485 0.035460 0.006105 0.014148 0.012206 0.012566 0.037217 0.017344 0.008509 0.023336 0.009002 0.318296 0.026371 0.047651 0.349209 0.018048 0.001996 0.006303 0.025402 0.003017 0.424611 0.044162 0.003742 0.022836 0.010662 0.004870 0.021881 0.007776 0.003285 0.050939 0.008082 0.017104 0.012688 0.298960 0.025858 0.007750 0.001156 0.005220 0.033540 0.006154 0.004365 0.006108 0.007124 0.005323 0.003086 0.067156 0.005611 0.028205 0.008194 0.004075 0.004845 0.003893 0.006028 0.008605 0.018803 0.774863 0.001124 0.002900 0.022927 0.002860 0.012142 0.013827 0.003071 0.507564 0.006535 0.004977 0.033122 0.007933 0.003470 0.015248 0.005571 0.013166 0.303965 0.019169 0.011522 0.007571 0.001474 0.003885 0.063113 0.379233 0.006176 0.006183 0.004406 0.021947 0.003224 0.007526 0.006833 0.009630 0.004281 0.010161 0.007491 0.005975 0.006444 0.399615 0.037910 0.015129 0.001208 0.003517 0.026635 0.004210 0.012550 0.021201 0.005221 0.012202 0.009963 0.011435 0.059478 0.015716 0.007210 0.019142 0.007674 0.023610 0.358342 0.040790 0.340636 0.016022 0.002007 0.005955 0.016743 0.004401 0.003218 0.004166 0.008548 0.003620 0.001778 0.504641 0.004702 0.058158 0.014584 0.003764 0.002869 0.003140 0.003748 0.006759 0.013375 0.336591 0.001165 0.004027 0.024958 0.002228 0.363110 0.071534 0.003913 0.018071 0.011601 0.006471 0.310012 0.011252 0.004884 0.038236 0.008796 0.027569 0.030108 0.030333 0.019818 0.009920 0.001413 0.005771 0.007754 0.003847 0.002781 0.003278 0.857933 0.003246 0.002372 0.012252 0.003025 0.032360 0.006823 0.002812 0.003315 0.002195 0.002615 0.007586 0.004021 0.011320 0.004438 0.026026 0.022451 0.002495 0.015439 0.037230 0.003783 0.011760 0.014382 0.008219 0.371086 0.016007 0.007003 0.020392 0.007711 0.326243 0.074063 0.022647 0.019092 0.011732 0.001994 0.006272 0.022567 0.004339 0.016873 0.017429 0.014495 0.012296 0.009385 0.029185 0.021231 0.362950 0.015206 0.353801 0.006814 0.013895 0.015203 0.022791 0.019034 0.029438 0.002726 0.010341 0.028138 0.002743 0.012980 0.021931 0.004320 0.011164 0.007599 0.007537 0.270806 0.013406 0.004790 0.013462 0.497034 0.018419 0.029809 0.022621 0.016421 0.011142 0.001364 0.004313 0.020779 0.002573 0.015868 0.028171 0.005348 0.012443 0.300374 0.007914 0.388838 0.015040 0.006356 0.023506 0.007375 0.033848 0.067422 0.022954 0.018466 0.011193 0.002180 0.009353 0.026510 0.004085 0.423665 0.044660 0.006729 0.011370 0.006328 0.032794 0.016085 0.021696 0.007393 0.021060 0.006443 0.013224 0.010449 0.019051 0.017344 0.304187 0.001495 0.005433 0.012357 0.003758 0.002494 0.003751 0.017227 0.003373 0.002099 0.438539 0.004437 0.365223 0.024647 0.003350 0.002937 0.004101 0.004077 0.006237 0.010881 0.082899 0.002043 0.005569 0.021995 0.386155 0.002686 0.004166 0.011538 0.005760 0.002387 0.358207 0.004835 0.050090 0.014140 0.004067 0.003499 0.003851 0.004320 0.010193 0.015814 0.089076 0.001629 0.005591 0.026664 0.003104 0.033527 0.346611 0.010721 0.010552 0.007358 0.024082 0.028598 0.357608 0.013854 0.014366 0.008384 0.024913 0.016945 0.019926 0.017948 0.025745 0.001987 0.007108 0.351817 0.007383 0.007942 0.008005 0.003570 0.491655 0.003201 0.005690 0.007389 0.007878 0.003767 0.009853 0.006252 0.005658 0.006794 0.036739 0.017557 0.014760 0.001260 0.002830 0.016743 0.004401 0.003218 0.004166 0.008548 0.003620 0.001778 0.504641 0.004702 0.058158 0.014584 0.003764 0.002869 0.003140 0.003748 0.006759 0.013375 0.336591 0.001165 0.004027 0.365276 0.006379 0.027195 0.024281 0.005196 0.025962 0.009402 0.008642 0.021687 0.012087 0.005210 0.357374 0.009084 0.015459 0.014322 0.044295 0.024855 0.016253 0.001524 0.005519 0.365607 0.009147 0.005215 0.008170 0.008278 0.015695 0.003542 0.047668 0.007642 0.028420 0.009690 0.006212 0.005851 0.005913 0.007219 0.029071 0.022388 0.408243 0.001650 0.004379 0.019534 0.002082 0.009182 0.006599 0.002126 0.890941 0.002879 0.002844 0.006953 0.003535 0.001949 0.010016 0.003654 0.003671 0.006448 0.013794 0.005650 0.004639 0.001172 0.002331 0.025470 0.001975 0.058399 0.388244 0.003526 0.020701 0.011523 0.005577 0.032079 0.009385 0.004041 0.316988 0.009079 0.027272 0.017133 0.033316 0.019962 0.008942 0.001116 0.005273 0.016743 0.004401 0.003218 0.004166 0.008548 0.003620 0.001778 0.504641 0.004702 0.058158 0.014584 0.003764 0.002869 0.003140 0.003748 0.006759 0.013375 0.336591 0.001165 0.004027 0.002855 0.000423 0.013069 0.959594 0.000690 0.002045 0.001155 0.001548 0.001735 0.001436 0.000609 0.002751 0.000781 0.003700 0.001355 0.002020 0.001689 0.001600 0.000286 0.000660 0.015125 0.004546 0.002473 0.003918 0.017599 0.003965 0.002332 0.409540 0.004705 0.092793 0.318947 0.003579 0.003064 0.004140 0.004176 0.007170 0.012779 0.080707 0.002220 0.006222 0.030446 0.002098 0.034711 0.302124 0.003627 0.011627 0.006400 0.006678 0.023666 0.011663 0.004267 0.014137 0.458988 0.022571 0.013139 0.022549 0.015892 0.010891 0.000985 0.003541 0.002855 0.000423 0.013069 0.959594 0.000690 0.002045 0.001155 0.001548 0.001735 0.001436 0.000609 0.002751 0.000781 0.003700 0.001355 0.002020 0.001689 0.001600 0.000286 0.000660 0.013677 0.001995 0.573745 0.034824 0.002975 0.017183 0.009474 0.003794 0.013762 0.005408 0.002156 0.248036 0.005218 0.011038 0.008223 0.025397 0.012748 0.005155 0.001028 0.004165 -------------------------------------------------------------------------------- Time 9.11 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 18 sites = 6 llr = 223 E-value = 7.4e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::::::8: pos.-specific C :::3:::::::3::::2: probability D :::::32::::::::3:: matrix E ::::::::3::::::2:: F ::223::::::::3:::3 G ::::::2:::2:2:5::: H :::::::::::::::::: I ::2::::::2325:2::: K :::3::::::3::::2:: L 5:::::::::::3:3::: M 5:::::::3::::::::: N ::3::::a:::::::::: P :83:3:7::::::::::2 Q ::::3::::::::::::: R :::2:7:::::2:::3:: S :2::::::232::::::: T :::::::::2:::::::: V :::::::::3:::2:::3 W :::::::::::::::::: Y ::::::::2::3:5:::2 bits 7.0 6.3 5.6 4.9 Information 4.2 * content 3.5 ** * * * * * (53.7 bits) 2.8 ********* *** ** 2.1 ****************** 1.4 ****************** 0.7 ****************** 0.0 ------------------ Multilevel LPNCFRPNESICIYGDAF consensus M PKPD MVKYLFLR V sequence Q -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------ YGL135W 55 2.32e-21 RDKRFSGSLK LPNCPRPNMSICIFGDAF DVDRAKSCGV YPL220W 55 2.32e-21 RDKRFSGSLK LPNCPRPNMSICIFGDAF DVDRAKSCGV YEL054C 1 1.33e-17 . MPPKFDPNEVKYLYLRAV GGEVGASAAL YDR418W 1 1.33e-17 . MPPKFDPNEVKYLYLRAV GGEVGASAAL YML010W 323 1.60e-12 RAMGKKKLKI LSIFQRDNYTGRIYIEAP KQSVIEKFCN YDR116C 218 4.13e-12 SSLLQESLGS MPFRQRGNSISIGVGKCY FTDREILQNI -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YGL135W 2.3e-21 54_[3]_145 YPL220W 2.3e-21 54_[3]_145 YEL054C 1.3e-17 [3]_147 YDR418W 1.3e-17 [3]_147 YML010W 1.6e-12 322_[3]_723 YDR116C 4.1e-12 217_[3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=18 seqs=6 YGL135W ( 55) LPNCPRPNMSICIFGDAF 1 YPL220W ( 55) LPNCPRPNMSICIFGDAF 1 YEL054C ( 1) MPPKFDPNEVKYLYLRAV 1 YDR418W ( 1) MPPKFDPNEVKYLYLRAV 1 YML010W ( 323) LSIFQRDNYTGRIYIEAP 1 YDR116C ( 218) MPFRQRGNSISIGVGKCY 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 18 n= 2151 bayes= 9.22038 E= 7.4e-013 -347 -172 -612 -505 -51 -555 -317 -56 -545 280 432 -510 -468 -374 -434 -488 -325 -152 -193 -222 -132 -153 -303 -251 -288 -316 -164 -320 -302 -266 -247 -288 397 -216 -256 -11 -199 -289 -312 -307 -112 -37 -238 -166 171 -272 -52 93 -214 -81 -30 198 255 -136 -174 -162 -106 -86 -119 -47 -151 458 -231 -116 179 -281 -13 -194 167 -169 -102 -143 -266 -45 154 -173 -130 -189 -167 -99 -150 -122 -243 -162 277 -298 -59 -218 -210 -178 -137 -193 285 229 -176 -190 -169 -217 -118 2 -274 -199 155 -155 -372 -317 -88 -398 -148 -346 -291 -153 -338 -153 365 -255 -255 -400 -262 -272 -140 -162 11 -211 -291 -26 -140 -325 -287 -271 -250 -208 381 -201 -249 -190 -195 -296 -312 -295 -362 -195 -239 -383 -321 -366 -12 -332 -373 -380 -299 416 -381 -262 -336 -203 -246 -389 -248 -276 -81 -69 -119 183 -98 -220 22 -140 -93 -121 319 -83 -201 -24 -73 55 -70 -132 -126 226 -110 2 -352 -268 -94 -311 -126 132 -308 -59 -9 -239 -294 -219 -240 130 147 202 -140 -121 -91 -71 -151 -63 -158 36 3 176 132 -134 -65 -90 -217 -37 -49 60 -80 -138 -156 -111 -121 443 -311 -222 76 -295 17 107 -239 -52 0 -218 -272 -175 89 -187 -112 -58 -27 368 -223 -89 -423 -357 -117 -47 -226 318 -390 146 6 -335 -383 -308 -331 -308 -194 43 -195 -173 -199 -67 -322 -264 307 -356 96 -203 -329 -150 -114 -258 -305 -246 -244 -231 -233 20 43 450 -174 -53 -404 -328 -79 216 -181 136 -365 198 8 -306 -350 -273 -294 -268 -172 -53 -160 -149 -130 -185 178 155 -268 -251 -14 -285 68 -232 -151 -99 -235 -22 209 -144 -126 -253 -228 -172 329 303 -383 -314 -246 -180 -230 -264 -386 -245 -165 -317 -367 -305 -308 -82 -159 -137 -238 -276 -177 -41 -354 -282 341 -347 21 -107 -335 -91 -53 -267 73 -243 -255 -234 -179 134 1 334 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 18 n= 2151 E= 7.4e-013 0.006828 0.002385 0.000943 0.001805 0.020182 0.001765 0.001457 0.039017 0.002097 0.500225 0.373984 0.001435 0.001931 0.003012 0.002522 0.002756 0.005665 0.025417 0.002059 0.004515 0.030255 0.002714 0.008024 0.010539 0.003904 0.009265 0.004197 0.006259 0.011312 0.011391 0.003385 0.006683 0.772687 0.009010 0.008649 0.075043 0.013477 0.009807 0.000904 0.002495 0.034675 0.006100 0.012584 0.018892 0.094248 0.012485 0.009143 0.110185 0.020748 0.040967 0.015208 0.194346 0.288723 0.015636 0.015249 0.026370 0.025741 0.040105 0.003442 0.015157 0.026465 0.188175 0.013173 0.026808 0.099960 0.011795 0.011976 0.015067 0.291968 0.022400 0.009285 0.018347 0.007818 0.029415 0.148328 0.024479 0.021741 0.019744 0.002468 0.010588 0.026667 0.003378 0.012179 0.019478 0.196130 0.010472 0.008713 0.012680 0.021410 0.020992 0.007282 0.012953 0.356207 0.197026 0.015110 0.021720 0.016635 0.016228 0.003477 0.021261 0.011311 0.001985 0.191861 0.020375 0.002187 0.009145 0.007128 0.003660 0.032848 0.006541 0.002500 0.017029 0.004753 0.013880 0.642747 0.013878 0.009163 0.004556 0.001278 0.003176 0.028627 0.002555 0.070540 0.013880 0.003828 0.068989 0.004958 0.006042 0.012585 0.010994 0.003317 0.011661 0.694396 0.009989 0.009082 0.021706 0.013861 0.009370 0.000901 0.002719 0.006135 0.002037 0.012522 0.004211 0.003118 0.006509 0.012067 0.005782 0.006892 0.005155 0.002363 0.879113 0.003522 0.006536 0.004962 0.019909 0.009750 0.004914 0.001406 0.003096 0.043066 0.004880 0.028684 0.213014 0.014661 0.017941 0.015236 0.021892 0.048148 0.031160 0.171935 0.027664 0.012222 0.034061 0.030715 0.118995 0.033080 0.029263 0.003280 0.100101 0.035139 0.007980 0.005697 0.009363 0.014998 0.009588 0.005479 0.143932 0.010821 0.047759 0.017689 0.009436 0.006436 0.008778 0.009690 0.200015 0.149125 0.296055 0.002986 0.009035 0.040217 0.004800 0.023046 0.038757 0.009663 0.105652 0.013407 0.195723 0.229095 0.028486 0.012000 0.026526 0.010966 0.031082 0.036336 0.123115 0.030803 0.027950 0.002667 0.009708 0.032609 0.169506 0.007563 0.012874 0.048788 0.010690 0.014777 0.121066 0.017477 0.050406 0.018784 0.010883 0.007502 0.011946 0.094963 0.022226 0.024645 0.048919 0.006513 0.267864 0.016153 0.004243 0.003495 0.005051 0.012847 0.059580 0.002731 0.523514 0.006161 0.198429 0.019599 0.004848 0.003467 0.004752 0.005163 0.009627 0.014021 0.097951 0.002032 0.006336 0.019010 0.004944 0.007033 0.009569 0.242030 0.007002 0.025425 0.014104 0.009369 0.025545 0.008524 0.008256 0.005971 0.007320 0.009427 0.016333 0.010654 0.083941 0.010579 0.474964 0.022556 0.005460 0.003972 0.006175 0.016667 0.369007 0.003736 0.148369 0.007298 0.284147 0.019893 0.005937 0.004349 0.006057 0.006677 0.012687 0.016291 0.050641 0.002597 0.007484 0.030649 0.002173 0.224924 0.175613 0.004508 0.014491 0.011892 0.007997 0.146547 0.014467 0.006596 0.024860 0.009696 0.034548 0.218121 0.029860 0.022455 0.012640 0.001614 0.006349 0.741398 0.064256 0.004618 0.006784 0.005224 0.023620 0.002658 0.009221 0.006313 0.013190 0.005970 0.005499 0.003881 0.004855 0.006027 0.045921 0.017814 0.028157 0.001511 0.003084 0.022078 0.005926 0.005626 0.008491 0.305409 0.007470 0.015155 0.027380 0.009016 0.038330 0.013009 0.007757 0.081711 0.007480 0.008723 0.016005 0.015516 0.185083 0.007939 0.211894 -------------------------------------------------------------------------------- Time 13.46 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 26 sites = 6 llr = 286 E-value = 7.7e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A :::::2:a235::::::::::::::: pos.-specific C ::2::::::::::::::::::::::: probability D 2::::3::::::::::2::::::::: matrix E ::::5:::::::7::::::2::::2: F :2:::2::3:::23:::::::::::: G :::3:::::::::::7:::::::5:: H :::::::::::::::::::::::::: I ::2:::3::3:::::33:2:::2:5: K 73:75:::32:3::3:33:::::3:2 L :3::::::::::::3::::::77::: M :::::::::::::::::::::::::: N ::::::5::::2::::::::::2::: P ::::::::::::::3::2:5::::3: Q 2:::::2::::::3:::3:::3:::8 R ::::::::2::::::::2::3::::: S :23::::::2:3:::::::::::::: T ::::::::::32:::::::3:::2:: V ::3:::::::2::3::2:8:7::::: W :::::::::::::::::::::::::: Y :::::3::::::2::::::::::::: bits 7.0 6.3 5.6 4.9 Information 4.2 content 3.5 * * * * * (68.9 bits) 2.8 * ***** ** * ***** ** 2.1 ************************** 1.4 ************************** 0.7 ************************** 0.0 -------------------------- Multilevel KKSKEDNAFAAKEFKGIKVPVLLGIQ consensus LVGKYI KITS QLIKQ TRQ KP sequence VP -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------- YGL135W 102 1.29e-24 KLNKNKKLIK KLSKKYNAFIASEVLIKQVPRLLGPQ LSKAGKFPTP YPL220W 102 1.29e-24 KLNKNKKLIK KLSKKYNAFIASEVLIKQVPRLLGPQ LSKAGKFPTP YEL054C 40 3.45e-20 PKIGPLGLSP KKVGEDIAKATKEFKGIKVTVQLKIQ NRQAAASVVP YDR418W 40 3.45e-20 PKIGPLGLSP KKVGEDIAKATKEFKGIKVTVQLKIQ NRQAAASVVP YNL185C 38 2.53e-19 ALGSKGIKAI DFCKEFNARSANYQPGVPVPVLITIK PDRTFTFEMK YML010W 522 3.06e-15 EGAVDLTSVS QSIKKAQAAKVTFQPGDRIEVLNGEQ RGSKGIVTRT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YGL135W 1.3e-24 101_[4]_90 YPL220W 1.3e-24 101_[4]_90 YEL054C 3.5e-20 39_[4]_100 YDR418W 3.5e-20 39_[4]_100 YNL185C 2.5e-19 37_[4]_95 YML010W 3.1e-15 521_[4]_516 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=26 seqs=6 YGL135W ( 102) KLSKKYNAFIASEVLIKQVPRLLGPQ 1 YPL220W ( 102) KLSKKYNAFIASEVLIKQVPRLLGPQ 1 YEL054C ( 40) KKVGEDIAKATKEFKGIKVTVQLKIQ 1 YDR418W ( 40) KKVGEDIAKATKEFKGIKVTVQLKIQ 1 YNL185C ( 38) DFCKEFNARSANYQPGVPVPVLITIK 1 YML010W ( 522) QSIKKAQAAKVTFQPGDRIEVLNGEQ 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 26 n= 2095 bayes= 8.44363 E= 7.7e-008 -198 -203 50 -49 -329 -296 -58 -326 268 -283 -205 -135 -295 124 -25 -205 -184 -313 -257 -224 -100 -33 -201 -102 178 -252 -16 -74 112 179 -4 -133 -231 -71 -91 45 -82 -82 -110 -37 -105 360 -387 -294 -88 -314 -140 146 -339 -49 -3 -276 -304 -244 -261 127 -99 215 -140 -120 -251 -208 -276 -219 -386 140 -113 -385 277 -342 -273 -187 -362 -152 -52 -262 -248 -373 -294 -279 -187 -284 -77 282 -382 -315 -84 -352 197 -297 -224 -175 -286 -46 -81 -228 -203 -312 -313 -264 -2 -39 77 -185 241 -302 119 -177 -254 -133 -86 -194 -260 -182 -190 -178 -178 -181 33 429 -179 -117 -158 -133 -200 -263 -7 139 -159 -191 -129 334 -282 109 -133 -152 -141 -193 -193 -157 349 2 -413 -353 -290 -221 -264 -311 -428 -292 -216 -349 -384 -342 -347 -128 -198 -189 -277 -312 67 -123 -183 -74 269 -254 8 -215 155 -177 -104 -111 -236 -23 147 -140 -109 -201 -170 -76 194 -9 -197 -100 -129 -217 -32 167 27 -107 -42 -136 -233 -80 -106 50 -80 -89 -144 -111 271 20 -377 -302 -215 -209 -204 -162 -364 -195 -130 -286 -322 -272 -295 -106 198 73 -231 -238 -121 -108 -116 -73 -231 -218 -5 -268 110 -228 -142 118 -229 -56 -84 183 142 -246 -208 -151 -332 -211 -295 337 214 -434 -57 -317 -369 -259 -230 -293 -418 -254 -316 -343 -316 -330 -18 279 -153 -35 -344 -244 304 -328 -85 -40 -278 -35 -3 -250 -312 244 -222 -228 -139 183 -78 15 -146 -129 -239 -133 -211 -292 -55 -207 123 144 -119 -177 276 -86 -55 -183 -151 -205 -210 -177 -184 -148 -320 -338 -303 313 -234 143 -388 -285 -238 -260 -381 -346 -318 -255 -280 -228 -279 -290 -115 -58 47 -85 -129 -268 -38 226 101 -72 -28 -143 -247 -81 -107 -154 -99 95 -154 -114 -180 -182 -238 -107 -299 -294 -8 -293 168 -231 -156 -144 112 256 169 -188 -154 -273 -213 -182 -133 -44 -412 -350 -214 -432 -232 112 -426 -137 -124 -382 -356 -361 -331 -355 -162 333 -309 -317 -130 -153 -209 57 -277 -294 -120 -300 -239 -254 -216 -209 356 -155 -212 -177 141 -272 -290 -265 -148 -69 -375 -273 -202 -361 -148 -45 -193 -153 -122 -292 -339 -208 187 -279 -169 303 -242 -220 -281 -146 -422 -304 -86 -440 -202 -89 -315 319 21 -354 -379 208 -253 -353 -263 -160 -192 -183 -260 -108 -456 -349 -78 -439 -207 60 -392 329 45 3 -355 -266 -295 -342 -233 -112 -181 -186 -152 -147 -182 -148 -303 259 -68 -327 108 -291 -210 -113 -295 -121 -95 -169 82 -296 -247 -220 -134 -96 -185 100 -177 -297 -103 235 -213 -129 -89 -202 270 -129 -189 -191 -148 -101 -211 -176 -247 -174 -339 -101 -344 -409 71 -343 -82 -233 -121 -220 -309 426 -124 -283 -255 -345 -210 -287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 26 n= 2095 E= 7.7e-008 0.019207 0.001927 0.092509 0.042731 0.002944 0.010592 0.008761 0.006016 0.588516 0.010147 0.004544 0.019309 0.006388 0.094652 0.043009 0.019639 0.015025 0.008328 0.001323 0.004434 0.037873 0.006234 0.016315 0.029499 0.098909 0.014370 0.011742 0.034441 0.199791 0.248614 0.018228 0.019566 0.009980 0.024552 0.027230 0.111296 0.030338 0.041173 0.003670 0.016179 0.036555 0.095574 0.004486 0.007770 0.015682 0.009366 0.004979 0.158378 0.008760 0.051369 0.018353 0.007277 0.006002 0.007385 0.008344 0.195855 0.027041 0.324692 0.002986 0.009147 0.013228 0.001853 0.009703 0.013073 0.001978 0.217437 0.005980 0.003999 0.623651 0.006747 0.002834 0.013477 0.004013 0.014008 0.035624 0.013240 0.009615 0.005487 0.001026 0.003027 0.020711 0.001095 0.038339 0.421800 0.002046 0.009321 0.007313 0.005009 0.359027 0.009169 0.003984 0.014657 0.006788 0.029122 0.029120 0.016699 0.013165 0.008368 0.000898 0.003370 0.074428 0.006002 0.111374 0.016612 0.152945 0.010187 0.029885 0.016864 0.015747 0.028680 0.010357 0.012889 0.008140 0.011408 0.013690 0.023591 0.015644 0.020734 0.009852 0.410972 0.021888 0.003498 0.021933 0.023875 0.007220 0.013303 0.012502 0.150903 0.030368 0.019198 0.007668 0.498092 0.006991 0.085481 0.020389 0.028322 0.020155 0.019105 0.002062 0.007045 0.847668 0.007988 0.003737 0.005196 0.003861 0.017887 0.002099 0.006696 0.004736 0.009536 0.004188 0.004392 0.003455 0.003753 0.004597 0.033404 0.013576 0.019672 0.001154 0.002404 0.119966 0.003351 0.018440 0.035914 0.186261 0.014168 0.013881 0.012975 0.267663 0.021093 0.009144 0.022783 0.009599 0.034228 0.141781 0.030723 0.025147 0.018090 0.002419 0.012373 0.289334 0.007363 0.016755 0.029972 0.011752 0.018302 0.010489 0.182819 0.110732 0.034294 0.014049 0.019169 0.009814 0.023140 0.024457 0.114740 0.030803 0.039416 0.002907 0.009694 0.495506 0.009021 0.004792 0.007354 0.006511 0.019373 0.003184 0.018772 0.007343 0.018668 0.007602 0.006797 0.005287 0.006080 0.006618 0.039031 0.211358 0.121094 0.001585 0.004025 0.032769 0.003728 0.029374 0.036176 0.005822 0.018264 0.012656 0.009023 0.196200 0.014852 0.007036 0.111966 0.010067 0.027217 0.028533 0.289772 0.144112 0.013227 0.001864 0.007343 0.007569 0.001826 0.008503 0.618403 0.126869 0.004086 0.008836 0.006389 0.007114 0.011995 0.003803 0.006453 0.002722 0.006911 0.005719 0.007518 0.006002 0.007421 0.006943 0.144919 0.026130 0.006178 0.006046 0.011022 0.236239 0.008509 0.007262 0.043820 0.013346 0.056418 0.018367 0.008713 0.005687 0.217661 0.010940 0.016777 0.020506 0.258455 0.004587 0.023337 0.027408 0.003209 0.012494 0.023761 0.006696 0.010887 0.008943 0.013750 0.215022 0.196095 0.008207 0.014508 0.334814 0.022063 0.034855 0.022884 0.018811 0.017616 0.001836 0.006140 0.021060 0.002809 0.007131 0.005766 0.003540 0.720614 0.002593 0.155244 0.006214 0.009988 0.003601 0.008142 0.003513 0.003648 0.005619 0.013882 0.007702 0.014982 0.001135 0.002817 0.034031 0.005274 0.090503 0.033280 0.011793 0.012901 0.010042 0.275852 0.184297 0.043709 0.015491 0.018289 0.008906 0.022934 0.024268 0.027888 0.027131 0.141189 0.002710 0.009512 0.021733 0.002232 0.012582 0.028397 0.003636 0.010773 0.012420 0.007555 0.293357 0.014567 0.006381 0.018249 0.107406 0.236900 0.164508 0.022091 0.018487 0.011008 0.001795 0.005922 0.030094 0.005790 0.003757 0.005282 0.006522 0.004137 0.002620 0.125533 0.004779 0.027931 0.007967 0.003504 0.004178 0.003292 0.005150 0.006918 0.017450 0.731837 0.000923 0.002336 0.030772 0.002722 0.015347 0.088514 0.004231 0.010778 0.005692 0.007195 0.017464 0.012401 0.004206 0.011575 0.581603 0.013757 0.011794 0.023807 0.142652 0.011097 0.001052 0.003339 0.027085 0.004885 0.004883 0.009029 0.007082 0.006772 0.004682 0.042324 0.024049 0.024928 0.008086 0.006511 0.004696 0.009476 0.186287 0.011746 0.016598 0.594855 0.001471 0.004556 0.010777 0.002858 0.003525 0.007271 0.015901 0.003922 0.003222 0.031163 0.010329 0.655379 0.021695 0.004229 0.003562 0.169585 0.008840 0.007022 0.008672 0.024090 0.002082 0.005875 0.012428 0.003714 0.002768 0.005334 0.016802 0.003935 0.003118 0.087479 0.006049 0.705027 0.025668 0.050539 0.004219 0.006370 0.006601 0.007606 0.010659 0.033665 0.002242 0.005776 0.026409 0.002845 0.018570 0.021386 0.003524 0.496657 0.008160 0.005993 0.194446 0.009600 0.004369 0.022475 0.006405 0.017423 0.026376 0.025260 0.094749 0.009368 0.001419 0.004569 0.029837 0.004027 0.018189 0.119904 0.008430 0.010539 0.006411 0.293257 0.020969 0.029453 0.010136 0.012139 0.321465 0.016390 0.013783 0.021567 0.019220 0.036274 0.001826 0.006182 0.013678 0.002355 0.006253 0.029698 0.002660 0.004850 0.021430 0.005337 0.051860 0.014308 0.008137 0.010759 0.005811 0.769271 0.021665 0.011392 0.009170 0.006673 0.001833 0.002859 -------------------------------------------------------------------------------- Time 17.17 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 23 sites = 3 llr = 169 E-value = 2.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::::::::::::: pos.-specific C ::::::::::::::::::::::: probability D :::::::::::::::::::::3: matrix E :::::::3::::::::::3:::: F ::3:::::a7:::::::3::::: G :3::::::::::::::::::37: H ::::::::::::::::::::::3 I ::7:::::::3:::::3:::::: K ::::::::::::::7a::::::: L :::7::3:::::7a::::::::: M ::::7:::::::::::::::::: N a::::::7::::::::7::7::: P :::::3:::3:::::::::3::: Q :7::::::::::::::::7:::: R ::::::::::::::3:::::::: S :::::7:::::a::::::::::7 T :::33:::::::3:::::::::: V ::::::7:::7:::::::::7:: W :::::::::::::::::7::::: Y ::::::::::::::::::::::: bits 7.0 6.3 5.6 * 4.9 * * Information 4.2 * * ** * content 3.5 *** * *** * * ***** * (81.4 bits) 2.8 *********************** 2.1 *********************** 1.4 *********************** 0.7 *********************** 0.0 ----------------------- Multilevel NQILMSVNFFVSLLKKNWQNVGS consensus GFTTPLE PI T R IFEPGDH sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------- YGL135W 181 5.06e-30 NVEMEEDVLV NQILMSVNFFVSLLKKNWQNVGS LVVKSSMGPA YPL220W 181 5.06e-30 NVEMEEDVLV NQILMSVNFFVSLLKKNWQNVGS LVVKSSMGPA YML010W 567 1.34e-14 TTKDIATIKL NGFTTPLEFPISTLRKIFEPGDH VTVINGEHQG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YGL135W 5.1e-30 180_[5]_14 YPL220W 5.1e-30 180_[5]_14 YML010W 1.3e-14 566_[5]_474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=23 seqs=3 YGL135W ( 181) NQILMSVNFFVSLLKKNWQNVGS 1 YPL220W ( 181) NQILMSVNFFVSLLKKNWQNVGS 1 YML010W ( 567) NGFTTPLEFPISTLRKIFEPGDH 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 23 n= 2116 bayes= 9.46011 E= 2.9e-004 -328 -174 -206 -332 -297 -334 8 -310 -337 -356 -276 411 -355 -233 -304 -179 -220 -364 -229 -249 -146 -118 -180 -59 -268 71 61 -291 -171 -217 -120 -117 -242 385 -117 -171 -165 -273 -194 -201 -221 -78 -414 -354 217 -408 -192 324 -389 34 27 -329 -373 -302 -329 -310 -191 58 -140 -62 -170 -49 -359 -262 -47 -346 -138 -10 -300 305 59 -270 -289 -202 -229 -219 115 -60 -134 -126 -200 -88 -370 -292 -165 -360 -179 -112 -323 -79 518 -283 -338 -250 -278 -211 92 -141 -173 -166 -75 -29 -225 -190 -234 -225 -107 -280 -243 -252 -181 -131 219 -174 -198 257 48 -252 -232 -199 -128 -21 -395 -319 -97 -384 -188 102 -376 140 -5 -331 -328 -291 -294 -299 -140 288 -194 -184 -178 -157 -33 134 -267 -207 25 -297 -169 -283 -207 350 -251 -82 -161 -116 -136 -295 -228 -182 -319 -97 -448 -410 488 -459 -232 -214 -482 -107 -137 -403 -382 -408 -418 -334 -363 -259 -74 42 -257 -85 -392 -342 467 -403 -161 -196 -405 -103 -122 -342 66 -328 -348 -288 -291 -229 -63 75 -140 -36 -399 -338 -164 -410 -223 232 -399 -56 -52 -349 -351 -332 -321 -326 -152 287 -258 -240 -113 -29 -285 -289 -258 -264 -168 -321 -312 -303 -216 -150 -277 -257 -247 319 84 -311 -246 -223 -170 -49 -359 -262 -47 -346 -138 -10 -300 305 59 -270 -289 -202 -229 -219 115 -60 -134 -126 -277 -119 -461 -358 -58 -443 -214 -49 -402 347 59 -383 -354 -270 -301 -362 -253 -121 -171 -177 -301 -207 -413 -296 -418 -417 -159 -358 315 -356 -276 -278 -386 -202 90 -352 -290 -399 -280 -315 -334 -220 -453 -364 -446 -456 -234 -380 329 -406 -320 -325 -418 -309 -28 -410 -337 -443 -307 -362 -260 -132 -197 -275 -229 -318 12 -10 -289 -233 -180 393 -325 -199 -255 -168 -175 -211 -201 -198 -381 -184 -425 -395 63 -431 -203 -360 -444 -200 -220 -370 -430 -334 -334 -406 -362 -344 676 -15 -192 -170 -167 97 -316 -348 72 -318 -209 -221 -113 -179 -265 406 -148 -232 -209 -306 -208 -256 -224 -148 -143 -199 -270 -260 15 -294 -251 -305 -235 379 108 -167 -226 -144 -169 -315 -224 -210 -48 1 -307 -244 -157 74 -138 17 -308 -114 -80 -249 -266 -236 -237 -189 -107 294 -202 -191 -172 -174 25 -206 -347 323 -146 -403 -307 -396 -295 -136 -332 -257 -257 -206 -263 -368 -260 -274 -97 -45 -140 -125 -169 -207 345 -258 -167 -226 -149 -42 -217 -92 -127 256 50 -243 -174 -70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 23 n= 2116 E= 2.9e-004 0.007777 0.002356 0.015735 0.005984 0.003668 0.008152 0.013869 0.006701 0.008846 0.006116 0.002781 0.853144 0.004198 0.007987 0.006223 0.023549 0.011710 0.005866 0.001603 0.003736 0.027476 0.003458 0.018767 0.039683 0.004505 0.134838 0.019928 0.007677 0.028032 0.016000 0.008178 0.021882 0.009193 0.577455 0.022744 0.024757 0.017172 0.011017 0.002050 0.005187 0.016360 0.004573 0.003710 0.005156 0.129759 0.004873 0.003465 0.543381 0.006194 0.091326 0.022570 0.005038 0.003720 0.004938 0.005215 0.009445 0.014335 0.109332 0.002970 0.013643 0.023209 0.005580 0.005448 0.009706 0.020848 0.007488 0.005047 0.053816 0.011464 0.597438 0.028296 0.007573 0.006666 0.009874 0.010415 0.017785 0.119354 0.048139 0.003111 0.008743 0.018913 0.004272 0.005035 0.007911 0.009190 0.006789 0.003784 0.026539 0.009794 0.041533 0.682841 0.006931 0.004731 0.007118 0.007431 0.018772 0.101939 0.027489 0.002365 0.006622 0.044989 0.006420 0.013746 0.015990 0.005683 0.017379 0.006222 0.008297 0.016960 0.012595 0.005364 0.019850 0.224517 0.012038 0.012962 0.482699 0.074711 0.012737 0.001573 0.005268 0.031025 0.006815 0.004227 0.006559 0.014707 0.005755 0.003553 0.116811 0.006772 0.189814 0.018191 0.004966 0.005085 0.005327 0.006651 0.010238 0.020366 0.535248 0.002046 0.005843 0.021959 0.002646 0.052170 0.151960 0.004542 0.019651 0.015575 0.007379 0.028423 0.010135 0.004458 0.558840 0.008684 0.022690 0.016716 0.036261 0.020902 0.009432 0.001623 0.005954 0.008256 0.004019 0.002937 0.003490 0.848369 0.003430 0.002631 0.013116 0.003250 0.034239 0.007271 0.003013 0.003482 0.002374 0.002812 0.007997 0.004345 0.012143 0.004703 0.028123 0.012737 0.004346 0.004324 0.005595 0.735283 0.005043 0.004282 0.014816 0.005539 0.035227 0.008039 0.004619 0.077961 0.004142 0.004586 0.011071 0.007159 0.014867 0.005074 0.035291 0.028685 0.006144 0.004134 0.005763 0.009231 0.004796 0.002785 0.287927 0.005767 0.048904 0.013071 0.004389 0.004337 0.004012 0.005508 0.008479 0.018694 0.532096 0.001319 0.003960 0.034444 0.006447 0.009062 0.008082 0.004811 0.013261 0.004075 0.006210 0.010574 0.008810 0.004192 0.017504 0.007249 0.006779 0.009211 0.738844 0.096072 0.008460 0.001432 0.004483 0.023209 0.005580 0.005448 0.009706 0.020848 0.007488 0.005047 0.053816 0.011464 0.597438 0.028296 0.007573 0.006666 0.009874 0.010415 0.017785 0.119354 0.048139 0.003111 0.008743 0.011051 0.003446 0.002683 0.005017 0.019319 0.003830 0.002980 0.041097 0.005671 0.800432 0.028203 0.003472 0.004245 0.006182 0.006358 0.006610 0.009278 0.031591 0.002398 0.006135 0.009400 0.001868 0.003742 0.007712 0.001591 0.004572 0.004359 0.004810 0.814858 0.006119 0.002782 0.007180 0.003403 0.009902 0.095353 0.007075 0.007210 0.004577 0.001129 0.002360 0.007455 0.001712 0.002829 0.004790 0.001311 0.003503 0.002588 0.004148 0.894515 0.004319 0.002044 0.005196 0.002727 0.004734 0.042161 0.004749 0.005205 0.003376 0.000936 0.001700 0.012440 0.003142 0.016712 0.008870 0.005879 0.009088 0.014202 0.053732 0.012332 0.014312 0.005377 0.754509 0.005183 0.010087 0.008742 0.025370 0.015942 0.016836 0.001945 0.005299 0.005373 0.002201 0.003445 0.003866 0.044651 0.004173 0.003215 0.004767 0.004233 0.018045 0.004096 0.003791 0.002507 0.003976 0.005035 0.004870 0.004359 0.006736 0.851801 0.018861 0.019942 0.002422 0.020546 0.117202 0.003219 0.007401 0.021583 0.006367 0.021551 0.015542 0.008591 0.014290 0.007851 0.672149 0.018371 0.016213 0.012602 0.008737 0.001862 0.003560 0.016015 0.002825 0.024237 0.015092 0.004440 0.013585 0.014486 0.007500 0.016087 0.008684 0.003694 0.684611 0.104059 0.012665 0.010678 0.029976 0.016600 0.008220 0.001669 0.004876 0.054021 0.007939 0.007824 0.011051 0.009697 0.137728 0.005016 0.064873 0.010848 0.032607 0.010807 0.008787 0.007786 0.007845 0.009870 0.021853 0.025537 0.558375 0.001942 0.005593 0.022908 0.002348 0.077653 0.014324 0.002608 0.775996 0.004762 0.003533 0.010946 0.004616 0.002434 0.019244 0.004941 0.006753 0.008588 0.019529 0.008693 0.005696 0.001298 0.003131 0.038442 0.005747 0.024842 0.025113 0.008960 0.019653 0.143301 0.009652 0.028773 0.015027 0.006685 0.036954 0.010984 0.021255 0.021156 0.478772 0.075903 0.013552 0.002352 0.012875 -------------------------------------------------------------------------------- Time 21.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YML010W 5.98e-26 322_[3(1.60e-12)]_181_[4(3.06e-15)]_19_[5(1.34e-14)]_474 YDR418W 4.37e-104 [3(1.33e-17)]_21_[4(3.45e-20)]_11_[1(2.07e-48)]_5_[2(1.09e-36)] YNL185C 2.81e-13 37_[4(2.53e-19)]_95 YPL220W 2.54e-137 4_[1(2.70e-50)]_1_[3(2.32e-21)]_29_[4(1.29e-24)]_15_[2(5.09e-34)]_3_[5(5.06e-30)]_14 YEL054C 4.37e-104 [3(1.33e-17)]_21_[4(3.45e-20)]_11_[1(2.07e-48)]_5_[2(1.09e-36)] YDR116C 7.68e-08 217_[3(4.13e-12)]_50 YGL135W 2.54e-137 4_[1(2.70e-50)]_1_[3(2.32e-21)]_29_[4(1.29e-24)]_15_[2(5.09e-34)]_3_[5(5.06e-30)]_14 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 5 reached. ******************************************************************************** CPU: quad.bcf.ku.edu ********************************************************************************